Closed leexgh closed 2 years ago
Test is failing but shouldn't be related
minimal_example.in.txt
test is failing:
-EGFR 1956 GRCh37 7 55242468 55242486 + protein_altering_variant In_Frame_Del DEL ATTAAGAGAAGCAACATCT AGCAA GCAA ENST00000275493.2:c.2238_2256delinsGCAA p.Leu747_Ser752delinsGln p.L747_S752delinsQ ENST00000275493 NM_005228.3 746 gaATTAAGAGAAGCAACATCT/gaGCAA 19/28 SUCCESS
+ 7 55242467 55242486 AATTAAGAGAAGCAACATCT AGCAA
This test case was added by https://github.com/genome-nexus/genome-nexus-annotation-pipeline/pull/113 Seems it is added for some VCF -> MAF conversion issue
File another ticket for fenomic location + annotation validating issue: https://github.com/genome-nexus/genome-nexus/issues/550
Fix: https://github.com/genome-nexus/genome-nexus/issues/529 https://github.com/genome-nexus/genome-nexus/issues/529#issuecomment-919430830