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genome-nexus / genome-nexus-annotation-pipeline

Library and tool for annotating MAF files using Genome Nexus Webserver API
MIT License
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Maf file validation #196

Closed ozguzMete closed 2 years ago

ozguzMete commented 2 years ago

Checks hard requirements of the MAF file. In other words, it searches for these column names: Chromosome, Start_Position, End_Position, Reference_Allele. It then checks if either Tumor_Seq_Allele1 or Tumor_Seq_Allele2 are present

ozguzMete commented 2 years ago

@inodb updated the code and the tests accordingly.