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genome-nexus / genome-nexus-annotation-pipeline

Library and tool for annotating MAF files using Genome Nexus Webserver API
MIT License
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Output format #198

Closed ozguzMete closed 1 year ago

ozguzMete commented 2 years ago

A possible solution for the issue #194

There are lots of empty columns in the output file. You will be able to use option-format option to supply an output format. As an example, you can create a file with the following line:

Hugo_Symbol,Entrez_Gene_Id,Center,NCBI_Build,Chromosome

the application will only output these columns + any other column/s required by the application. Order is preserved.

Currently, it only supports commas as the separator. You can use any number of spaces you like...

inodb commented 1 year ago

Follow up as reported by @rmadupuri : https://github.com/genome-nexus/genome-nexus-annotation-pipeline/issues/210