genome nexus tests to support both hg19 and hg38

genome-nexus / genome-nexus-annotation-pipeline

Library and tool for annotating MAF files using Genome Nexus Webserver API

MIT License

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genome nexus tests to support both hg19 and hg38 #205

Open jagnathan opened 1 year ago

jagnathan commented 1 year ago

genome nexus tests to support both hg19 and hg38 versions

rmadupuri commented 1 year ago

hg38 MAF for testing - https://media.githubusercontent.com/media/cBioPortal/datahub/14caf20fc73e5e9e7b09be8ecaf28c8a53202bef/public/brain_cptac_2020/data_mutations.txt

ozguzMete commented 1 year ago

@jagnathan @rmadupuri is it enough to add this above file as a test case or do you need something else? This file is big. I have tested with its 5 items, ended up with records that failed due to other unknown reason: 4

mjafin commented 5 months ago

Hi there, I really like the idea of Genome Nexus but am missing something; how do I use the Docker annotation pipeline to annotate GRCh38 variants instead of 37? Or is the support not yet there?