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genome-nexus / genome-nexus-annotation-pipeline

Library and tool for annotating MAF files using Genome Nexus Webserver API
MIT License
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Add split-output option #209

Open ozguzMete opened 1 year ago

ozguzMete commented 1 year ago

This option creates two additional files for failed and successful annotations.

ozguzMete commented 1 year ago

option behavior added to the GET request.

ozguzMete commented 1 year ago

dump-failed option is added.

if the output file is x.txt and this option is present, failed annotations will be written additionally to a file named x.txt.FAILED.

ozguzMete commented 1 year ago

The removed test file is old and fails ci/circleci:build.

200 is covering this and much more

ozguzMete commented 1 year ago

I have renamed dump-failed to split-output because we started to produce SUCCESS file. it is split-output instead of split hence split is a method name

ozguzMete commented 1 year ago

we might want to keep this on hold until the big file support goes live