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genome-nexus / genome-nexus-annotation-pipeline

Library and tool for annotating MAF files using Genome Nexus Webserver API
MIT License
8 stars 27 forks source link

Big File Handling #226

Closed ozguzMete closed 2 years ago

ozguzMete commented 2 years ago

All the necessary changes to handle big files

NOTE: the code is experimental, and this PR shouldn't be approved

sheridancbio commented 2 years ago

I just realized that this was part of the gsoc effort ... so gsoc mentors would be in a much better position to evaluate this PR than I am. I am happy to discuss my comments and to wait for mentors to lead the evaluation.

inodb commented 2 years ago

We moved the essential bits for performance imporvement to https://github.com/genome-nexus/genome-nexus-annotation-pipeline/pull/228

inodb commented 2 years ago

Thanks for reviewing @sheridancbio !