genome-nexus / genome-nexus-annotation-pipeline

Library and tool for annotating MAF files using Genome Nexus Webserver API
MIT License
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Add server version to version sub command #251

Closed inodb closed 11 months ago

inodb commented 11 months ago

This adds the "Server:" line below to the "version" subcommand, as well as VEP annotation sources:

$ java -jar annotationPipeline/target/annotationPipeline-*.jar version
Client: e895367-dirty-SNAPSHOT
Server: 1.0.2
Annotation Sources
    VEP Server: NA
    VEP Cache: NA
    VEP: grch37
    Cancer Hotspots: v2
    HGNC: 22-10-01
    3D Hotspots: v2
    Mutation Assessor: v3
    My Variant Info: Includes many annotation sources, see https://docs.myvariant.info/en/latest/doc/data.html
    reVUE: d8a7d01bac02671e74b4522bacfca6e82f360046

Note that current info endpoint does not return the VEP server and cache version, so it currently lists NA, just like the version endpoint: https://www.genomenexus.org/version