entrypoint to cmd switch breaks old usage of cli - Githubissues

genome-nexus / genome-nexus-annotation-pipeline

Library and tool for annotating MAF files using Genome Nexus Webserver API

MIT License

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entrypoint to cmd switch breaks old usage of cli #262

Open inodb opened 1 year ago

inodb commented 1 year ago

See related PR: https://github.com/genome-nexus/genome-nexus-annotation-pipeline/pull/250 and example of how it breaks the old documented interface: https://github.com/genome-nexus/genome-nexus-annotation-pipeline/issues/258

[ ] Restore old CLI usage
[ ] Add test that follows steps of the docs for annotating a MAF: https://docs.genomenexus.org/annotate-maf-file