genome-nexus / genome-nexus-importer

Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/
MIT License
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Feature request to show "germline biallelic" statistics in the portal #43

Closed cband closed 3 years ago

cband commented 3 years ago

Show "# germline homozygous" in gene and variant level pages.

In the variant level page, show "% germline homozygous" in the "cancer patient prevalence field. This data is in "signal.pancancer_somatic_germline_stats.txt" file. For example:

~~in https://www.signaldb.org/variant/1:g.45797228C%3ET cancer patient prevalence: Germline 0.8% (Biallelic: 18.4%, Germline homozygous: 0.02%)~~

Thank you.

leexgh commented 3 years ago

Move this ticket to signal repo: https://github.com/knowledgesystems/signal/issues/112