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genome-nexus / genome-nexus-importer

Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/
MIT License
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Env var REF_ENSEMBL_VERSION is ignored when mongo data is initialized (Dockerfile) #46

Open zimnyx opened 3 years ago

zimnyx commented 3 years ago

This issue happens only when Dockerfile is used. Please see https://github.com/genome-nexus/genome-nexus/issues/438#issuecomment-824283217 for detailed description of the issue.

It's not only REF_ENSEMBL_VERSION that is ignored. All env vars defined here https://github.com/genome-nexus/genome-nexus/blob/master/docker-compose.yml#L18 are not visible to scripts/import_mongo.sh