Update hgnc symbols - Githubissues

genome-nexus / genome-nexus-importer

Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/

MIT License

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Update hgnc symbols #70

Closed leexgh closed 1 year ago

leexgh commented 1 year ago

Fix: https://github.com/genome-nexus/genome-nexus/issues/640 Update hgnc symbol to 2022.10.01 version https://github.com/cBioPortal/datahub-study-curation-tools/blob/master/gene-table-update/build-input-for-importer/hgnc_complete_set.txt

[x] grch37_ensembl92
[x] grch38_ensembl92
[x] grch38_ensembl95
[x] Compare gene symbols from ensembl and hgnc, and store the difference in a file called ignored_genes.txt (When generating files it needs to read ignored_genes.txt and ignore certain genes during the process)