Update canonical transcript overrides with explanation - Githubissues

genome-nexus / genome-nexus-importer

Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/

MIT License

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Update canonical transcript overrides with explanation #75

Closed leexgh closed 1 year ago

leexgh commented 1 year ago

Fix: https://github.com/genome-nexus/genome-nexus/issues/664

Using new oncokb isoform overrides that are extracted from onockb API https://www.oncokb.org/api/v1/utils/allCuratedGenes and separate to grch37 and grch38 files
add new columns to explain where does each canonical transcript come from. Options: esembl only one transcript, ensembl longest, uniprot, oncokb, mskcc, manually (stored in genome-nexus-isoform-overrides)

Need to merge https://github.com/genome-nexus/genome-nexus-importer/pull/74 first