Fix: https://github.com/genome-nexus/genome-nexus/issues/684
Input file ensembl_biomart_pfam.txt is downloaded from retrieve_biomart_tables.R. We haven't updated input files for a while, the old file has an empty column "Protein stable ID" that causes problems with parsing.
[x] Add a new arguments in retrieve_biomart_tables.R to download files based on reference genome
[x] Update all input files in grch38_ensembl95
[x] Re-generate all transcripts files with new input files
Fix: https://github.com/genome-nexus/genome-nexus/issues/684 Input file
ensembl_biomart_pfam.txt
is downloaded fromretrieve_biomart_tables.R
. We haven't updated input files for a while, the old file has an empty column "Protein stable ID" that causes problems with parsing.retrieve_biomart_tables.R
to download files based on reference genomegrch38_ensembl95
Previous EGFR transcript:
New EGFR transcript: