Configurable reference genome in Genome Nexus VEP

genome-nexus / genome-nexus-vep

Java spring boot wrapper around VEP

https://www.genomenexus.org

MIT License

3 stars 14 forks source link

Closed sandertan closed 5 years ago

sandertan commented 5 years ago

Update documentation on how to set up VEP cache
Create environment variable that will be used by java code to specify reference genome for VEP --assembly parameter
Move Maven build step to Dockerfile
Add tested GRCh38 variants to API documentation.

sandertan commented 5 years ago

Hi @inodb This PR is ready to merge I think.