search

genome-vendor / bsmap

Unofficial repo for software vendoring or packaging purposes
19 stars 11 forks source link

Can't execute the make step #4

Closed katha22 closed 4 years ago

katha22 commented 6 years ago

Following the install instruction of the readme doesn't work.

System: -bash-4.2$ uname -a Linux login.cluster.de 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux Error: g++ -DMAXHITS=1000 -DTHREAD -funroll-loops -Lsamtools -Isamtools -Lgzstream -Igzstream -O3 -m64 -c param.cpp -o param.o param.cpp: In constructor ‘Param::Param()’: param.cpp:8:20: error: ‘_SC_NPROCESSORS_ONLN’ was not declared in this scope param.cpp:8:40: error: ‘sysconf’ was not declared in this scope make: *** [param.o] Error 1 Solution: adding "#include" in the beginning of param.cpp solved the issue

katha22 commented 6 years ago

sorry didn't see the PR .. please merge

tmooney commented 6 years ago

Sorry, this is not an official bsmap repository. It is unmaintained and contains a years-outdated version of the codebase. I would advise searching elsewhere for a more current version of the software.

Looks like this particular issue may have been addressed in version 2.90 according to: https://github.com/zyndagj/BSMAP/blob/3b7fa4d106c8a8750eaf2a611aab8c57940c2a0e/RELEASE.txt