Add LOH calls - Githubissues

genome / analysis-workflows

Open workflow definitions for genomic analysis from MGI at WUSM.

MIT License

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Open jasonwalker80 opened 7 years ago

jasonwalker80 commented 7 years ago

jasonwalker80 commented 6 years ago

LOH region detection
- probably with varscan
- based on ~cmiller/oneoffs/runloh.sh
- This re-runs varscan on the bam. Investigate whether the varscan output files being created in detect variants can be re-used for this purpose. (probably)