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genome / analysis-workflows

Open workflow definitions for genomic analysis from MGI at WUSM.
MIT License
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Standardize vep command line #728

Open johnegarza opened 5 years ago

johnegarza commented 5 years ago

https://github.com/genome/analysis-workflows/blob/a93be3183c2218ee50f13ae2675dd1cde563fdbc/definitions/tools/vep.cwl#L6

The vep launch command currently uses some non-standard options that can be updated to use more documented options

chrisamiller commented 4 years ago

@johnegarza Is this still an issue, and if so, can you add a little more info about what needs to be updated?