I have both DNA and RNA seq data I'm using for bam-readcounts and I had previously run RNA before, remembering the runtime was similar for DNA (~1 hr per sample, using HPC cluster and 30G reserved memory). Now, I'm seeing it's taken more than 2 days to run a single RNA sample and I wasn't sure if this was an issue for anyone else. It was difficult getting this program installed in the first place, so I'm not sure what could have happened and I'm hoping it's something I can adjust without re-installing/compiling the software again. Any advice or suggestion would be appreciated! Thanks.
I have both DNA and RNA seq data I'm using for bam-readcounts and I had previously run RNA before, remembering the runtime was similar for DNA (~1 hr per sample, using HPC cluster and 30G reserved memory). Now, I'm seeing it's taken more than 2 days to run a single RNA sample and I wasn't sure if this was an issue for anyone else. It was difficult getting this program installed in the first place, so I'm not sure what could have happened and I'm hoping it's something I can adjust without re-installing/compiling the software again. Any advice or suggestion would be appreciated! Thanks.