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genome / bam-readcount

Count bases in BAM/CRAM files
MIT License
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bam-readcount #34

Open xiezhan opened 7 years ago

xiezhan commented 7 years ago

Hello,everbody: Recently I used bam-readcount to calculate the number of A,C,G,T at each site from bam format file. Because the depth is extremely high(>100000),when i ran bam-readcount,i used -d ,but i still got wrong result.In other words,-d change nothing. Did somebody meet the same question?
Would anybody give me some advice?

best, Zhan

xiezhan commented 7 years ago

I run without providing a region. And -d would work if I add the region.