[JOSS REVIEW] Minor edits to the github-based documentation

genome / bam-readcount

Count bases in BAM/CRAM files

MIT License

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[JOSS REVIEW] Minor edits to the github-based documentation #81

Open friedue opened 3 years ago

friedue commented 3 years ago

[ ] extend the commands for the installation

git clone https://github.com/genome/bam-readcount 
cd bam-readcount
mkdir build
cd build
cmake ..
make

[ ] perhaps link to VAtools

bebatut commented 3 years ago

It could also be added that bam-readcount can be installed via conda and then give some instruction

apldx commented 3 years ago

Good suggestion, @friedue, done. @bebatut, also a great idea about conda, but we will need to update our conda recipe for the new version (looks like it's currently at v0.8 in bioconda), so leaving this open for now.

ccwang002 commented 3 months ago

Bioconda is now able to build the latest version of bam-readcount (v1.0.1) https://github.com/bioconda/bioconda-recipes/pull/47911