The reporting script does a lot of things that it probably shouldnt do. Once additional annotations are handled by other tools, the reporting script should just be used to aggregate the SNVs/indels, SVs, and QC data into final output files that are human readable and/or formatted for report generation (json, xml, etc).
dhspence
commented
5 years ago
The reporting script does a lot of things that it probably shouldnt do. Once additional annotations are handled by other tools, the reporting script should just be used to aggregate the SNVs/indels, SVs, and QC data into final output files that are human readable and/or formatted for report generation (json, xml, etc).