The automation script currently uses the somatic version, which includes variant calling. We dont need this and it takes extra time, which costs money. Switch to germline version and dont call variants. This will require changing the perl script. We will need to find the germline app id and make sure the input options are correct.
The automation script currently uses the somatic version, which includes variant calling. We dont need this and it takes extra time, which costs money. Switch to germline version and dont call variants. This will require changing the perl script. We will need to find the germline app id and make sure the input options are correct.