The Dragen reference app allows the inclusion of a liftover file and liftover validation when building a custom reference. This was causing errors during initial testing and was disabled in the interest of time; however, it claims that including these options will improve the quality of the generated reference.
The Dragen somatic app allows the inclusion of many additional vcf and bed files, which may produce useful additional information.
Should we use any of these options in our final version?
The Dragen reference app allows the inclusion of a liftover file and liftover validation when building a custom reference. This was causing errors during initial testing and was disabled in the interest of time; however, it claims that including these options will improve the quality of the generated reference.
The Dragen somatic app allows the inclusion of many additional vcf and bed files, which may produce useful additional information.
Should we use any of these options in our final version?