Exome ref-align builds seem to generate a discreet error in the reference_alignment_coverage_stats step. The build still proceeds to completion and success but the error shows up in the logs in the reference_alignment_coverage_stats.*.err file.
277 2015-05-04 14:51:18-0500 clia1: DBD::Pg::st execute failed: ERROR: insert or update on table "instance" violates foreign key constraint "instance_peer_instance_id_fkey"
278 2015-05-04 14:51:18-0500 clia1: DETAIL: Key (peer_instance_id)=(6dfd26945f1b4213b27d90d28ea44500) is not present in table "instance". at /opt/gms/B3W1Y66/sw/ur/lib/UR/DBI.pm line 888.
279 2015-05-04 14:51:18-0500 clia1: 2015/05/04 14:51:18 Workflow::DataSource::InstanceSchema id(Workflow::DataSource::InstanceSchema): Workflow::DataSource::InstanceSchema: Error executing SQL:
280 2015-05-04 14:51:18-0500 clia1: INSERT INTO workflow.instance (workflow_plan_id,workflow_instance_id,peer_instance_id,parent_instance_id,parent_execution_id,parallel_index, output_stored,name,intention,input_stored,current_execution_id) VALUES (?,?,?,?,?,?,?,?,?,?,?)
281 2015-05-04 14:51:18-0500 clia1: PARAMS: 'c8aec8328be74a13ba49673970c388dc', '218d63b56e4d4da0b5fcb5b618414cfd', '6dfd26945f1b4213b27d90d28ea44500', '98424092236d44c580deaba9e9d7f5a2', (undef), '1', '^E^H^C^@^@^@^@', 'Coverage', (undef), '^E^H^C^@^@^@^G^D^Q^XWorkflow::Link::Instance^C^@^@^@^F
282 2015-05-04 14:51:18-0500 clia1: ^D6065^@^@^@^L__get_serial^H<81>^@^@^@^M_change_count^H<80>^@^@^@^Fbroken
Exome ref-align builds seem to generate a discreet error in the
reference_alignment_coverage_statsstep. The build still proceeds to completion and success but the error shows up in the logs in the reference_alignment_coverage_stats.*.err file.