search

genome / joinx

a tool for processing .bed and .vcf files
21 stars 11 forks source link

Unbundle boost-1.56 and zlib-1.28 local copies from source code tarballs #19

Open mmokrejs opened 6 years ago

mmokrejs commented 6 years ago

Please remove the bundled copy of boot libraries from the tree and let cmake to use those installed system-wide.

Running some kind of install procedure during compile target is not acceptable.

[  5%] Performing install step for 'zlib-1.2.8'
cp libz.so.1.2.8 /scratch/var/tmp/portage/sci-biology/joinx-1.12.0/work/joinx-1.12.0/build/vendor/zlib/lib
chmod 755 /scratch/var/tmp/portage/sci-biology/joinx-1.12.0/work/joinx-1.12.0/build/vendor/zlib/lib/libz.so.1.2.8
 * ACCESS DENIED:  SYMLINK:      /usr/lib64/libperl.so.5.27
 * ACCESS DENIED:  open_wr:      /etc/ld.so.cache~
[  5%] Completed 'zlib-1.2.8'

Why are you even trying to mangle my libperl.so and ld.so.cache?

build.log.txt