Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
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Revert "Revert "Convert pindel to use the HTSlib API instead of the l… #15
Okay... now trying to get back the HTSLIB-related changes; in any case I have now got the original version of Pindel running on my Mac (via Oracle VB) and I should have the time now to correct the INSTALL script.
Okay... now trying to get back the HTSLIB-related changes; in any case I have now got the original version of Pindel running on my Mac (via Oracle VB) and I should have the time now to correct the INSTALL script.