Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
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updated the regression test to include pindel2vcf, and removed some d… #55
…updated the regression test to include pindel2vcf, removed some dead code. Just one part of refactoring, but useful for testing nevertheless