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Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
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Multiple samples #58

Open mingfang618 opened 7 years ago

mingfang618 commented 7 years ago

Dear Kai,

I have a question about the running with multiple samples. I found the memary usage was increased with sample numbers increased in configuration file, so I plan to input small number of samples in configuration file per run. I am wondering if the results by inputing multiple samples and single/few sample(s) will be different with pindel.

Thanks, MIng Fang

jmche commented 6 years ago

I just run and it was different

misrak commented 5 years ago

So, how should we proceed? Do a batch of 10 samples or do all the 100 samples together?