Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
I added new fields to INFO column, SAF (number of supported alternative allele reads for forward strand) and SAR (number of supported alternative allele reads for reverse strand)
I added new fields to INFO column, SAF (number of supported alternative allele reads for forward strand) and SAR (number of supported alternative allele reads for reverse strand)