Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
I am having trouble finding what the pindel output "RP" file represents. Nothing in the help, nothing in the website, nothing, just an open BioStars thread without answers.
Does anyone have the answer? Does it contain regions with sequence identity?
Hello,
I am having trouble finding what the pindel output "RP" file represents. Nothing in the help, nothing in the website, nothing, just an open BioStars thread without answers.
Does anyone have the answer? Does it contain regions with sequence identity?