Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
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allow float insert size in config file without losing sample name ( issue 81 ) #93
a float in the average insert size field of the config file overwrites sample name.
https://github.com/genome/pindel/issues/81