correct reading functional annotations from gff

genomeannotation / GAG

Generates an NCBI .tbl file of annotations on a genome.

MIT License

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correct reading functional annotations from gff #119

Closed smg283 closed 10 years ago

smg283 commented 10 years ago

Right now it is printing DBxref from gene , but not from mRNA. Should ignore dbxref associated with gene and print dbxref associated with mRNA (to CDS feature on .tbl)

bruab commented 10 years ago

So I reckon the easiest way is when reading the .gff, just ignore any Dbxref annotations on 'gene' lines...

As for why it's not printing the mRNA Dbxrefs, I have no idear.

bruab commented 10 years ago

EDIT: No nevermind, will just update Gene.to_tbl() to skip the annotations. It should only write the gene_name, right?

smg283 commented 10 years ago

only gene name based on our detailed scribbles from yesterday.

On Fri, Apr 25, 2014 at 4:52 PM, BrianReallyMany notifications@github.comwrote:

EDIT: No nevermind, will just update Gene.to_tbl() to skip the annotations. It should only write the gene_name, right?

— Reply to this email directly or view it on GitHubhttps://github.com/BrianReallyMany/GAG/issues/119#issuecomment-41455505 .