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genomeannotation / annie

annie = ANNotation Information Extractor
MIT License
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IndexError: list index out of range #10

Open kishore556 opened 2 years ago

kishore556 commented 2 years ago

I am receiving the following error as : IndexErro: list index out of range" though I used blast_out put file using SWissProt protein database, SwissProt protein database: uniprot_sprot.fasta. Command on DOS prompt is written below.

F:\soft_genome\annie>python2 annie.py -b talaro_in/blast1.out -g talaro_in/gffgenes.gff3 -db talaro_in/uniprot_sprot.fasta -o gff_out.gff3 Traceback (most recent call last): File "annie.py", line 122, in main(sys.argv) File "annie.py", line 78, in main annotations.extend(read_sprot(blast_file, gff_file, fasta_file)) File "F:\soft_genome\annie\src\sprot.py", line 9, in read_sprot gff_info = get_gff_info(gff_file) File "F:\soft_genome\annie\src\sprot.py", line 80, in get_gff_info key, val = split[0], split[1] IndexError: list index out of range

Juke34 commented 2 years ago

You should try on a Unix machine. You can also give a try to another tool for that task: agat_sp_manage_functional_annotation.pl from AGAT.