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genomeannotation / annie

annie = ANNotation Information Extractor
MIT License
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Add possibility to retrieve terms from Pathway db #5

Closed Juke34 closed 8 years ago

Juke34 commented 8 years ago

I was trying to retrieve information from Pathway Db (KEGG,MetaCyc...) that are present in last columns of Interproscan outputs. Even if the DBs were present in the WhiteList, the information present over the 13th column were not taken in account. The fix checks all column over the 13th and if one of the element of the whitelist is present in those columns, we report the value in the output (We create a new DBxref element).

Juke34 commented 8 years ago

Improvement in the research of the GN information in the header and fix a bug removing the new line when GN is the last element of the line.