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genomeannotation / transvestigator

Validates transcriptome and prepares it for submission to the NCBI
MIT License
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Correct for internal stops #2

Closed bruab closed 10 years ago

bruab commented 10 years ago

Our current input GFF doesn't have phase info for CDS, so we need to find out what it should be by doing a 3-frame translation (strand is provided, at least :) and taking the phase that yields no internal stops. If 0, 2 or 3 translations yield no internal stops, we'll print an error message and discard the CDS.

bruab commented 10 years ago

Wait! Resolve #3 first, then see if this is still necessary

tedsta commented 10 years ago

As it turns out, not necessary :D