search

genomeannotation / transvestigator

Validates transcriptome and prepares it for submission to the NCBI
MIT License
3 stars 1 forks source link

utility script to remove transcripts from fasta and tbl file #20

Closed bruab closed 9 years ago

bruab commented 9 years ago

Useful for when you run tbl2asn, upload and get adapter sequence hits from NCBI. Typically it's just a few transcript IDs; they don't even produce a report, they just print them in red text on the upload page.

I've been handling this by manually deleting the sequences and corresponding .tbl entries in vim, but a script is way better.