Some points representing contig-level assemblies on the DToL project page scatter plot are labelled as primary haploid, when they represent the alternate haplotype. E.g. on this plot of Agrotis puta only, there are 2 dots, both labelled primary but one has assembly_level=chromosome while the less contiguous one has assembly_level=contig.
Some points representing contig-level assemblies on the DToL project page scatter plot are labelled as primary haploid, when they represent the alternate haplotype. E.g. on this plot of Agrotis puta only, there are 2 dots, both labelled primary but one has assembly_level=chromosome while the less contiguous one has assembly_level=contig.