The BEAUti templates are set without benefiting from threads; individual tree-likelihoods use the TreeLikelihood class instead of ThreadedTreeLikelihood and the CompoundDistribution for likelihood does not have its threads flag set. This is easily fixed by replacing
The BEAUti templates are set without benefiting from threads; individual tree-likelihoods use the TreeLikelihood class instead of ThreadedTreeLikelihood and the CompoundDistribution for likelihood does not have its threads flag set. This is easily fixed by replacing
with
and spec="TreeLikelihood" with spec="ThreadedTreeLikelihood".