genomic-medicine-sweden / gms_16S

A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
GNU General Public License v3.0
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Add continuous integration #23

Closed samuell closed 2 weeks ago

samuell commented 4 weeks ago

It would be great with a CI setup, preferably with GitHub actions, that could install the pipeline and run a test pipeline, to make sure that contributions don't break functionality.

The Jasen CI setup could perhaps be used as a starting point.

Perhaps the nf-test framework can be used to set up tests for the pipeline.