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genomic-medicine-sweden / gmsmetapost

GMS Metagenomics post-classification
MIT License
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Use docker containers for both singularity and docker profiles #55

Open ljmesi opened 2 years ago

ljmesi commented 2 years ago

Description of feature

Currently singularity profile uses private sylabs account to host the singularity images as noted in #40. Another approach which removes the need for the private account use is to utilise GMS dockerhub images for both use with singularity and docker profiles.

sofstam commented 2 years ago

@ljmesi Would it be possible to upload the Dockerfile and environment.yml in the repo?

ljmesi commented 2 years ago

Yes, they are actually already here: https://github.com/genomic-medicine-sweden/gmsmetapost/blob/dev/conf/environments/Dockerfile and here: https://github.com/genomic-medicine-sweden/gmsmetapost/blob/dev/conf/environments/environment.yml