TB workflow runs post_align_qc twice

genomic-medicine-sweden / jasen

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.

https://jasen.readthedocs.io/en/latest/

GNU General Public License v3.0

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Open ryanjameskennedy opened 2 months ago

ryanjameskennedy commented 2 months ago

TB workflow runs post_align_qc twice, the second time with the wrong bam file.