Jasen hopper config and saureus workflow fixes

genomic-medicine-sweden / jasen

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.

https://jasen.readthedocs.io/en/latest/

GNU General Public License v3.0

9 stars 11 forks source link

Closed ryanjameskennedy closed 1 month ago

ryanjameskennedy commented 1 month ago

The nextflow.hopper.config needs fixing and prp isn't running because of the serotypefinder module inactivation.