Extract reads of species of interests

genomic-medicine-sweden / meta-val

nf-core/taxprofiler post-processing; verification of classification results; consensus maps

MIT License

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Closed LilyAnderssonLee closed 5 months ago

LilyAnderssonLee commented 11 months ago

Extract reads for viruses or a list of species of interests

For Kraken2 and Centrifuge, use extract_kraken_reads.py from krakentools. Add it as a nf-core module
For Diamond, custom script.

LilyAnderssonLee commented 5 months ago

Solved in #15