genomic-medicine-sweden / taxprofiler

Taxonomic profiling of shotgun metagenomic data
https://nf-co.re/taxprofiler
MIT License
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Complexity filtering for Nanopore data #10

Closed sofstam closed 1 year ago

sofstam commented 2 years ago

Description of feature

Feature

We need to add an optional complexity filtering step for Nanopore data:

What needs to be done:

Investigate the available tools for Nanopore and implement/add it to nf-core/taxprofiler

This can be closed when:

sofstam commented 2 years ago

https://github.com/nf-core/taxprofiler/issues/69