genomic-medicine-sweden / taxprofiler

Taxonomic profiling of shotgun metagenomic data
https://nf-co.re/taxprofiler
MIT License
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Host-reads removal for Nanopore reads #5

Closed sofstam closed 2 years ago

sofstam commented 2 years ago

Feature

Allow a step to remove potential host-reads (human reads) for nanopore reads.

What needs to be done

Use minimap2 to remove human reads from nanopore reads. Minimap2 is already implemented as nf-core module

This can be closed when