Closed sofstam closed 1 year ago
What should be included in the test databases?
known mixture of (gut) bacteria, (ancient human) eukaryotes, and (yeast) fungi
.P. roqueforti
and human mitochondrial genome
.For a minimal database -profile test
: Use the same species as for kraken2 + SARS-CoV-2 (MetaMaps, Kaiju)
Feature
We need to update the test dataset for taxprofiler so that
-profile test
can be run successfully.What needs to be done
Update the test dataset for Centrifuge, Kaiju and MetaMaps. This is similar to: https://github.com/nf-core/test-datasets/pull/477
This can be closed when: