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genomic-medicine-sweden
/
tomte
A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
MIT License
11
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3
forks
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Sex info for DROP
#160
Jakob37
closed
2 days ago
1
Update vep to 112 and references encode 46
#159
Lucpen
closed
3 days ago
1
Merge pull request #157 from genomic-medicine-sweden/dev
#158
Lucpen
closed
1 week ago
0
Release 2.2.1
#157
Lucpen
closed
1 week ago
1
fixing multiqc
#156
Lucpen
closed
1 week ago
1
Merge pull request #154 from genomic-medicine-sweden/dev
#155
Lucpen
closed
1 week ago
1
Release 2.2.0
#154
Lucpen
closed
1 week ago
1
Prepare release 2.2.0
#153
Lucpen
closed
2 weeks ago
1
Allow running DROP without reference samples
#152
Jakob37
closed
3 weeks ago
7
fix bootstrapann input
#151
Lucpen
closed
3 weeks ago
1
mRNA and rRNA percentages missing from MultiQC output
#150
Jakob37
opened
3 weeks ago
2
Added possibility to download refs
#149
Lucpen
closed
2 weeks ago
1
Add switch for variant calling
#148
Lucpen
opened
1 month ago
0
Adds possibility to make drop database
#147
Lucpen
opened
1 month ago
21
ALLELE_SPECIFIC_CALLING:BOOTSTRAPANN restarts on resume
#146
Jakob37
closed
3 weeks ago
8
Non-ACGTN reference allele
#145
Jakob37
closed
1 month ago
4
Download references
#144
Lucpen
closed
3 weeks ago
1
Merge pull request #142 from genomic-medicine-sweden/dev
#143
Lucpen
closed
2 months ago
1
Release 2.1.0
#142
Lucpen
closed
2 months ago
1
Prepare release 2.1.0
#141
Lucpen
closed
2 months ago
1
Remove unnecessary tabix
#140
Lucpen
closed
2 months ago
1
SPLICE_COUNTS_DIR using DROP reference data
#139
Jakob37
closed
2 months ago
1
Remove unnecessary tabix tabix modules in call variants subworkflow
#138
Lucpen
closed
2 months ago
0
fix GATKs ASEReadCounter
#137
Lucpen
closed
2 months ago
3
Crash in OUTRIDER in DROP in `DROP_CONFIG_RUN_AE` when running single sample
#136
Jakob37
closed
2 months ago
15
GATK's ASEReadCounter crash "More then one variant at position"
#135
Jakob37
closed
2 months ago
13
Add workflow that builds DROP database
#134
Lucpen
opened
2 months ago
0
Add subworkflow that downloads references
#133
Lucpen
closed
2 weeks ago
0
camelize drop output column names and update gnu-wget container
#132
Lucpen
closed
2 months ago
1
Give systematic naming to columns from DROP output
#131
Lucpen
closed
2 months ago
2
Add hgnc id to research output in DROP
#130
Lucpen
opened
2 months ago
0
fix bug allelic imbalance
#129
Lucpen
closed
2 months ago
2
Allelic imbalance output is empty
#128
Lucpen
closed
2 months ago
1
Adapt vcf to scout
#127
Lucpen
closed
3 months ago
1
Add tag in vcf
#126
jemten
closed
3 months ago
0
vcfs with only one variant per line so that they can be handled by Scout
#125
Lucpen
closed
3 months ago
1
Pass strand information correctly to DROP
#124
Lucpen
opened
3 months ago
0
Template update nf-core/tools version 2.14.1
#123
Lucpen
closed
3 months ago
1
Template update for nf-core/tools version 2.14.1
#122
Lucpen
closed
3 months ago
0
Update tools
#121
Lucpen
closed
3 months ago
2
Update nf-core template
#120
jemten
closed
3 months ago
1
FAI index input parameter
#119
arvindsundaram
closed
4 months ago
3
Update CODEOWNERS
#118
pbiology
closed
3 months ago
2
Merge pull request #116 from genomic-medicine-sweden/dev
#117
Lucpen
closed
4 months ago
1
Patch release 2.0.1 - Grinch
#116
Lucpen
closed
4 months ago
1
Patch Publish research file vep
#115
Lucpen
closed
4 months ago
1
Merge pull request #113 from genomic-medicine-sweden/dev
#114
Lucpen
closed
4 months ago
1
Release 2.0.0
#113
Lucpen
closed
4 months ago
3
feat prepare for release
#112
Lucpen
closed
4 months ago
1
Merge to master
#111
Lucpen
closed
4 months ago
2
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