FAI index input parameter

genomic-medicine-sweden / tomte

A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient

MIT License

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Closed arvindsundaram closed 4 months ago

arvindsundaram commented 4 months ago

Nf-core supported '--fasta_fai' in not supported in tomte.

Lucpen commented 4 months ago

Hi Arvind,

it should be --fai instead of --fasta_fai, try it out and let me know if you keep having problems. I hope it helps,

Lucía

arvindsundaram commented 4 months ago

That's correct - it works. Sorry my mistake :)

Lucpen commented 4 months ago

No problem, I am glad that it worked :)