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genomic-medicine-sweden / tomte

A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
MIT License
11 stars 3 forks source link

Remove unnecessary tabix tabix modules in call variants subworkflow #138

Closed Lucpen closed 2 months ago

Lucpen commented 2 months ago

Description of feature

If bcftools modules are updated, one can add the argument --write-index=tbi ignorer to obtain the .tbi without having to run an additional module. The call variants subworkflowshould be simplified by doing this