genomicsITER / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

MIT License

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Fix conda environments #12

Closed druvus closed 4 years ago

druvus commented 4 years ago

nf-core/nanoclust pull request

Many thanks for contributing to nf-core/nanoclust!

This PR request cleans up conda environment files and makes them follow Bioconda recommendations. The versions are at the same time bump to keep the code up to date. Environments are now only using conda and not pip.

This PR will hopefully solve the issues previously seen in the read clustering step while using conda.

PR checklist

[x] This comment contains a description of changes (with reason)
[x] If you've fixed a bug or added code that should be tested, add tests!
[x] Ensure the test suite passes (nextflow run . -profile test,docker).

genomicsITER commented 4 years ago

Hi

Thank you for your time checking this project! We really appreciate your contribution, and it seems that the new conda envs are working fine in different machines.